Mercurial > repos > timpalpant > java_genomics_toolkit

comparison galaxy-conf/MapDyads.xml @ 9:9266d807ca85

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author timpalpant
date Tue, 06 Mar 2012 21:55:46 -0500
parents 4fc118372ae7
children b1952a90d4bf
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8:5a3f8b0b80f9 9:9266d807ca85
26 </outputs> 26 </outputs>
27 27
28 <help> 28 <help>
29 .. class:: warningmark 29 .. class:: warningmark
30 30
31 This tool requires sequencing reads in BAM format. If your reads are in SAM format, use the SAM-to-BAM tool under NGS: SAMTools. 31 This tool requires sequencing reads in SAM, BAM, Bed format.
32 32
33 .. class:: warningmark 33 .. class:: warningmark
34 34
35 For paired-end MNase data, read centers are approximated by using the center of the read. For single-end data, the estimated mononucleosome fragment length must be specified, which will be used to offset reads from the + and - strands. 35 For paired-end MNase data, read centers are approximated by using the center of the read. For single-end data, the estimated mononucleosome fragment length must be specified, which will be used to offset reads from the + and - strands.
36 </help> 36 </help>