Mercurial > repos > timpalpant > java_genomics_toolkit
comparison galaxy-conf/RollingReadLength.xml @ 20:9d56b5b85740 draft
Reuploaded to see if tools get loaded correctly this time.
| author | timpalpant |
|---|---|
| date | Fri, 15 Jun 2012 15:10:26 -0400 |
| parents | |
| children | b43c420a6135 |
comparison
equal
deleted
inserted
replaced
| 19:8ad390e82b92 | 20:9d56b5b85740 |
|---|---|
| 1 <tool id="RollingReadLength" name="Compute mean fragment length" version="1.1.0"> | |
| 2 <description>over each locus</description> | |
| 3 <command interpreter="sh">galaxyToolRunner.sh ngs.RollingReadLength -i $input -a ${chromInfo} -o $output</command> | |
| 4 <inputs> | |
| 5 <param format="sam,bam,bed,bedgraph" name="input" type="data" label="Mapped reads" /> | |
| 6 </inputs> | |
| 7 <outputs> | |
| 8 <data format="wig" name="output" /> | |
| 9 </outputs> | |
| 10 | |
| 11 <help> | |
| 12 | |
| 13 This tool will compute the mean length of all fragments overlapping a given locus, and can be used to identify sites with exceptionally long or short reads. | |
| 14 | |
| 15 .. class:: warningmark | |
| 16 | |
| 17 This tool requires paired-end SAM, BAM, Bed, or BedGraph formatted data. Using single-end data will result in a constant read length. | |
| 18 | |
| 19 </help> | |
| 20 </tool> |