Mercurial > repos > timpalpant > java_genomics_toolkit
comparison galaxy-conf/StripMatrix.xml @ 20:9d56b5b85740 draft
Reuploaded to see if tools get loaded correctly this time.
| author | timpalpant |
|---|---|
| date | Fri, 15 Jun 2012 15:10:26 -0400 |
| parents | |
| children | b43c420a6135 |
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| 19:8ad390e82b92 | 20:9d56b5b85740 |
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| 1 <tool id="StripMatrix" name="Strip headers" version="1.1.0"> | |
| 2 <description>from an aligned matrix</description> | |
| 3 <command interpreter="sh">galaxyToolRunner.sh visualization.StripMatrix -i $input -o $output</command> | |
| 4 <inputs> | |
| 5 <param format="tabular" name="input" type="data" label="Aligned matrix" /> | |
| 6 </inputs> | |
| 7 <outputs> | |
| 8 <data format="tabular" name="output" metadata="input" /> | |
| 9 </outputs> | |
| 10 <tests> | |
| 11 <test> | |
| 12 <param name="input" value="test.matrix2png.txt"/> | |
| 13 <output name="output" file="stripMatrix.txt"/> | |
| 14 </test> | |
| 15 </tests> | |
| 16 | |
| 17 <help> | |
| 18 | |
| 19 This tool is intended to strip the column/row headers off of an aligned matrix (in matrix2png format) for easy import into Matlab or other software where only the data values are required. It removes the first row and first column from a tabular file. | |
| 20 | |
| 21 ----- | |
| 22 | |
| 23 **Example** | |
| 24 | |
| 25 If the following tabular matrix is used as input :: | |
| 26 | |
| 27 ID col1 col2 col3 | |
| 28 row1 2 4 5 | |
| 29 row2 5 1 1 | |
| 30 | |
| 31 then the following tabular matrix will be produced as output :: | |
| 32 | |
| 33 2 4 5 | |
| 34 5 1 1 | |
| 35 | |
| 36 </help> | |
| 37 </tool> |