Mercurial > repos > timpalpant > java_genomics_toolkit
comparison galaxy-conf/PercusDecomposition.xml @ 11:b1952a90d4bf
Uploaded
| author | timpalpant |
|---|---|
| date | Mon, 09 Apr 2012 11:50:23 -0400 |
| parents | |
| children | 81d5b81fb3c2 |
comparison
equal
deleted
inserted
replaced
| 10:d063d22f4e80 | 11:b1952a90d4bf |
|---|---|
| 1 <tool id="PercusDecomposition" name="Derive Percus energy landscape" version="1.0.0"> | |
| 2 <description>from occupancy data</description> | |
| 3 <command interpreter="sh">galaxyToolRunner.sh nucleosomes.PercusDecomposition -d $dyads -n $N -o $output</command> | |
| 4 <inputs> | |
| 5 <param name="dyads" type="data" format="bigwig,wig" label="Dyad counts (smoothed)" /> | |
| 6 <param name="N" type="integer" value="147" optional="true" label="Assumed nucleosome size" /> | |
| 7 </inputs> | |
| 8 <outputs> | |
| 9 <data name="output" format="wig" /> | |
| 10 </outputs> | |
| 11 | |
| 12 <help> | |
| 13 .. class:: warningmark | |
| 14 | |
| 15 See Locke G, Tolkunov D, Moqtaderi Z, Struhl K and Morozov AV (2010) High-throughput sequencing reveals a simple model of nucleosome energetics. Proceedings of the National Academy of Sciences 107: 20998–21003 and Percus JK (1976) Equilibrium state of a classical fluid of hard rods in an external field. J Stat Phys 15: 505–511 for derivation. | |
| 16 </help> | |
| 17 </tool> |