Mercurial > repos > timpalpant > java_genomics_toolkit

comparison galaxy-conf/ReadLengthDistributionMatrix.xml @ 25:b43c420a6135 draft default tip

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Incorporate fix: https://github.com/timpalpant/java-genomics-toolkit/commit/9a6c61b7c6b8d85a1cd3f595eed657a537b85dc9
author timpalpant
date Sat, 09 Feb 2019 14:02:24 -0500
parents eb53be9a09f4
children
comparison
equal deleted inserted replaced
24:a77e126ae856 25:b43c420a6135
1 <tool id="ReadLengthDistributionMatrix" name="Create read length distribution matrix" version="1.0.0"> 1 <tool id="ReadLengthDistributionMatrix" name="Create read length distribution matrix" version="1.0.0">
2 <description>across a genomic interval</description> 2 <description>across a genomic interval</description>
3 <command interpreter="sh">galaxyToolRunner.sh ngs.ReadLengthDistributionMatrix -i $input --chr $chr --start $start --stop $stop --min $min --max $max --bin $bin -o $output</command> 3 <command interpreter="bash">galaxyToolRunner.sh ngs.ReadLengthDistributionMatrix -i $input --chr $chr --start $start --stop $stop --min $min --max $max --bin $bin -o $output</command>
4 <inputs> 4 <inputs>
5 <param format="sam,bam,bed,bedgraph" name="input" type="data" label="Mapped reads" /> 5 <param format="sam,bam,bed,bedgraph" name="input" type="data" label="Mapped reads" />
6 <param name="chr" type="text" label="Chromosome" /> 6 <param name="chr" type="text" label="Chromosome" />
7 <param name="start" type="integer" value="1" label="Start base pair" /> 7 <param name="start" type="integer" value="1" label="Start base pair" />
8 <param name="stop" type="integer" value="1000" label="Stop base pair" /> 8 <param name="stop" type="integer" value="1000" label="Stop base pair" />