Mercurial > repos > timpalpant > java_genomics_toolkit
comparison src/edu/unc/genomics/WigFileConverter.java @ 2:e16016635b2a
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author | timpalpant |
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date | Mon, 13 Feb 2012 22:12:06 -0500 |
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1:a54db233ee3d | 2:e16016635b2a |
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1 package edu.unc.genomics; | |
2 | |
3 import java.io.IOException; | |
4 import java.nio.file.Path; | |
5 | |
6 import com.beust.jcommander.IStringConverter; | |
7 import com.beust.jcommander.ParameterException; | |
8 | |
9 import edu.unc.genomics.io.WigFile; | |
10 import edu.unc.genomics.io.WigFileException; | |
11 | |
12 /** | |
13 * @author timpalpant | |
14 * | |
15 */ | |
16 public class WigFileConverter implements IStringConverter<WigFile> { | |
17 | |
18 @Override | |
19 public WigFile convert(String value) throws ParameterException { | |
20 PathConverter converter = new PathConverter(); | |
21 Path p = converter.convert(value); | |
22 try { | |
23 return WigFile.autodetect(p); | |
24 } catch (WigFileException | IOException e) { | |
25 throw new ParameterException("Error autodetecting and initializing BigWig/Wig file"); | |
26 } | |
27 } | |
28 | |
29 } |