Mercurial > repos > timpalpant > java_genomics_toolkit
comparison galaxy-conf/GeneTrackToBedGraph.xml @ 13:eb53be9a09f4 draft
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author | timpalpant |
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date | Sat, 19 May 2012 10:36:45 -0400 |
parents | 81d5b81fb3c2 |
children | 3e477c7e0e73 |
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12:81d5b81fb3c2 | 13:eb53be9a09f4 |
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1 <tool id="GeneTrackToBedGraph" name="GeneTrack to BedGraph" version="1.0.0"> | 1 <tool id="GeneTrackToBedGraph" name="GeneTrack to BedGraph" version="1.0.0"> |
2 <description>converter</description> | 2 <description>converter</description> |
3 <command interpreter="sh">galaxyToolRunner.sh converters.GeneTrackToBedGraph -i $input -o $output</command> | 3 <command interpreter="sh">galaxyToolRunner.sh converters.GeneTrackToBedGraph -i $input -o $output</command> |
4 <inputs> | 4 <inputs> |
5 <param name="input" type="data" format="genetrack" label="Input GeneTrack index" /> | 5 <param name="input" type="data" format="tabular" label="Input GeneTrack index" /> |
6 </inputs> | 6 </inputs> |
7 <outputs> | 7 <outputs> |
8 <data name="output" format="bedgraph" metadata_source="input" /> | 8 <data name="output" format="bedgraph" metadata_source="input" /> |
9 </outputs> | 9 </outputs> |
10 | 10 <tests> |
11 <test> | |
12 <param name="input" value="test.genetrack" ftype="tabular"/> | |
13 <output name="output" file="geneTrackToBedGraph.bedGraph"/> | |
14 </test> | |
15 </tests> | |
11 <help> | 16 <help> |
12 | 17 |
13 This tool will sum the counts from the forward and reverse strands in a GeneTrack_ index to create a BedGraph file. | 18 This tool will sum the counts from the forward and reverse strands in a GeneTrack_ index to create a BedGraph file. |
14 | 19 |
15 .. _GeneTrack: http://atlas.bx.psu.edu/genetrack/docs/genetrack.html | 20 .. _GeneTrack: http://atlas.bx.psu.edu/genetrack/docs/genetrack.html |