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comparison galaxy-conf/GeneTrackToBedGraph.xml @ 13:eb53be9a09f4 draft

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author timpalpant
date Sat, 19 May 2012 10:36:45 -0400
parents 81d5b81fb3c2
children 3e477c7e0e73
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12:81d5b81fb3c2 13:eb53be9a09f4
1 <tool id="GeneTrackToBedGraph" name="GeneTrack to BedGraph" version="1.0.0"> 1 <tool id="GeneTrackToBedGraph" name="GeneTrack to BedGraph" version="1.0.0">
2 <description>converter</description> 2 <description>converter</description>
3 <command interpreter="sh">galaxyToolRunner.sh converters.GeneTrackToBedGraph -i $input -o $output</command> 3 <command interpreter="sh">galaxyToolRunner.sh converters.GeneTrackToBedGraph -i $input -o $output</command>
4 <inputs> 4 <inputs>
5 <param name="input" type="data" format="genetrack" label="Input GeneTrack index" /> 5 <param name="input" type="data" format="tabular" label="Input GeneTrack index" />
6 </inputs> 6 </inputs>
7 <outputs> 7 <outputs>
8 <data name="output" format="bedgraph" metadata_source="input" /> 8 <data name="output" format="bedgraph" metadata_source="input" />
9 </outputs> 9 </outputs>
10 10 <tests>
11 <test>
12 <param name="input" value="test.genetrack" ftype="tabular"/>
13 <output name="output" file="geneTrackToBedGraph.bedGraph"/>
14 </test>
15 </tests>
11 <help> 16 <help>
12 17
13 This tool will sum the counts from the forward and reverse strands in a GeneTrack_ index to create a BedGraph file. 18 This tool will sum the counts from the forward and reverse strands in a GeneTrack_ index to create a BedGraph file.
14 19
15 .. _GeneTrack: http://atlas.bx.psu.edu/genetrack/docs/genetrack.html 20 .. _GeneTrack: http://atlas.bx.psu.edu/genetrack/docs/genetrack.html