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comparison galaxy-conf/IntervalAverager.xml @ 13:eb53be9a09f4 draft

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author timpalpant
date Sat, 19 May 2012 10:36:45 -0400
parents 81d5b81fb3c2
children 3e477c7e0e73
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12:81d5b81fb3c2 13:eb53be9a09f4
1 <tool id="IntervalAverager" name="Average intervals" version="1.0.0"> 1 <tool id="IntervalAverager" name="Average intervals" version="1.0.0">
2 <description>that have been aligned</description> 2 <description>that have been aligned</description>
3 <command interpreter="sh">galaxyToolRunner.sh visualization.IntervalAverager -i $input -l $loci -o $output</command> 3 <command interpreter="sh">
4 galaxyToolRunner.sh visualization.IntervalAverager -l $loci -o $output $file1
5 #for $input in $inputs
6 ${input.file}
7 #end for
8 </command>
4 <inputs> 9 <inputs>
5 <param format="wig,bigwig" name="input" type="data" label="Sequencing data" /> 10 <param name="file1" label="Sequencing data" type="data" format="bigwig,wig" />
11 <repeat name="inputs" title="Additional sequencing data">
12 <param name="file" type="data" format="bigwig,wig" />
13 </repeat>
6 <param format="bed" name="loci" type="data" label="List of intervals (with alignment points)" /> 14 <param format="bed" name="loci" type="data" label="List of intervals (with alignment points)" />
7 </inputs> 15 </inputs>
8 <outputs> 16 <outputs>
9 <data format="tabular" name="output" /> 17 <data format="tabular" name="output" />
10 </outputs> 18 </outputs>