Mercurial > repos > timpalpant > java_genomics_toolkit

comparison galaxy-conf/BaseAlignCounts.xml @ 25:b43c420a6135 draft default tip

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Incorporate fix: https://github.com/timpalpant/java-genomics-toolkit/commit/9a6c61b7c6b8d85a1cd3f595eed657a537b85dc9
author timpalpant
date Sat, 09 Feb 2019 14:02:24 -0500
parents 9d56b5b85740
children
comparison
equal deleted inserted replaced
24:a77e126ae856 25:b43c420a6135
1 <tool id="BaseAlignCounts" name="Calculate coverage" version="2.0.0"> 1 <tool id="BaseAlignCounts" name="Calculate coverage" version="2.0.0">
2 <description>of sequencing reads</description> 2 <description>of sequencing reads</description>
3 <command interpreter="sh">galaxyToolRunner.sh ngs.BaseAlignCounts -i $input -a ${chromInfo} -x $X -o $output</command> 3 <command interpreter="bash">galaxyToolRunner.sh ngs.BaseAlignCounts -i $input -a ${chromInfo} -x $X -o $output</command>
4 <inputs> 4 <inputs>
5 <param name="input" type="data" format="sam,bam,bed,bedgraph" label="Sequencing reads" /> 5 <param name="input" type="data" format="sam,bam,bed,bedgraph" label="Sequencing reads" />
6 <param name="X" type="integer" value="-1" label="In silico extension (-1 for fragment length)" /> 6 <param name="X" type="integer" value="-1" label="In silico extension (-1 for fragment length)" />
7 </inputs> 7 </inputs>
8 <outputs> 8 <outputs>