Mercurial > repos > timpalpant > java_genomics_toolkit

comparison galaxy-conf/FindOutlierRegions.xml @ 25:b43c420a6135 draft default tip

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Incorporate fix: https://github.com/timpalpant/java-genomics-toolkit/commit/9a6c61b7c6b8d85a1cd3f595eed657a537b85dc9
author timpalpant
date Sat, 09 Feb 2019 14:02:24 -0500
parents 9d56b5b85740
children
comparison
equal deleted inserted replaced
24:a77e126ae856 25:b43c420a6135
1 <tool id="WigFindOutliers" name="Find outlier regions" version="1.1.0"> 1 <tool id="WigFindOutliers" name="Find outlier regions" version="1.1.0">
2 <description>such as CNVs</description> 2 <description>such as CNVs</description>
3 <command interpreter="sh">galaxyToolRunner.sh ngs.FindOutlierRegions -i $input -w $window -t $threshold $below -o $output</command> 3 <command interpreter="bash">galaxyToolRunner.sh ngs.FindOutlierRegions -i $input -w $window -t $threshold $below -o $output</command>
4 <inputs> 4 <inputs>
5 <param format="bigwig,wig" name="input" type="data" label="Input data" /> 5 <param format="bigwig,wig" name="input" type="data" label="Input data" />
6 <param name="window" type="integer" value="150" label="Window size" /> 6 <param name="window" type="integer" value="150" label="Window size" />
7 <param name="threshold" type="float" value="3" label="Threshold (fold times the mean)" /> 7 <param name="threshold" type="float" value="3" label="Threshold (fold times the mean)" />
8 <param name="below" type="boolean" checked="false" truevalue="-b" falsevalue="" label="Search for outliers below the threshold" /> 8 <param name="below" type="boolean" checked="false" truevalue="-b" falsevalue="" label="Search for outliers below the threshold" />