Mercurial > repos > timpalpant > java_genomics_toolkit

comparison galaxy-conf/GreedyCaller.xml @ 25:b43c420a6135 draft default tip

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Incorporate fix: https://github.com/timpalpant/java-genomics-toolkit/commit/9a6c61b7c6b8d85a1cd3f595eed657a537b85dc9
author timpalpant
date Sat, 09 Feb 2019 14:02:24 -0500
parents 9d56b5b85740
children
comparison
equal deleted inserted replaced
24:a77e126ae856 25:b43c420a6135
1 <tool id="CallNukes" name="Call Nucleosomes" version="1.1.0"> 1 <tool id="CallNukes" name="Call Nucleosomes" version="1.1.0">
2 <description>in an MNase experiment</description> 2 <description>in an MNase experiment</description>
3 <command interpreter="sh">galaxyToolRunner.sh nucleosomes.GreedyCaller -d $dyads -s $smoothed -n $N -o $output</command> 3 <command interpreter="bash">galaxyToolRunner.sh nucleosomes.GreedyCaller -d $dyads -s $smoothed -n $N -o $output</command>
4 <inputs> 4 <inputs>
5 <param name="dyads" type="data" format="bigwig,wig" label="Dyad counts" /> 5 <param name="dyads" type="data" format="bigwig,wig" label="Dyad counts" />
6 <param name="smoothed" type="data" format="bigwig,wig" label="Smoothed dyad counts" /> 6 <param name="smoothed" type="data" format="bigwig,wig" label="Smoothed dyad counts" />
7 <param name="N" type="integer" value="147" optional="true" label="Assumed nucleosome size" /> 7 <param name="N" type="integer" value="147" optional="true" label="Assumed nucleosome size" />
8 </inputs> 8 </inputs>