Mercurial > repos > timpalpant > java_genomics_toolkit

comparison galaxy-conf/RollingReadLength.xml @ 25:b43c420a6135 draft default tip

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Incorporate fix: https://github.com/timpalpant/java-genomics-toolkit/commit/9a6c61b7c6b8d85a1cd3f595eed657a537b85dc9
author timpalpant
date Sat, 09 Feb 2019 14:02:24 -0500
parents 9d56b5b85740
children
comparison
equal deleted inserted replaced
24:a77e126ae856 25:b43c420a6135
1 <tool id="RollingReadLength" name="Compute mean fragment length" version="1.1.0"> 1 <tool id="RollingReadLength" name="Compute mean fragment length" version="1.1.0">
2 <description>over each locus</description> 2 <description>over each locus</description>
3 <command interpreter="sh">galaxyToolRunner.sh ngs.RollingReadLength -i $input -a ${chromInfo} -o $output</command> 3 <command interpreter="bash">galaxyToolRunner.sh ngs.RollingReadLength -i $input -a ${chromInfo} -o $output</command>
4 <inputs> 4 <inputs>
5 <param format="sam,bam,bed,bedgraph" name="input" type="data" label="Mapped reads" /> 5 <param format="sam,bam,bed,bedgraph" name="input" type="data" label="Mapped reads" />
6 </inputs> 6 </inputs>
7 <outputs> 7 <outputs>
8 <data format="wig" name="output" /> 8 <data format="wig" name="output" />