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diff java-genomics-toolkit/resources/assemblies/hg19Patch2.len @ 0:1daf3026d231

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author timpalpant
date Mon, 13 Feb 2012 21:55:55 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/java-genomics-toolkit/resources/assemblies/hg19Patch2.len	Mon Feb 13 21:55:55 2012 -0500
@@ -0,0 +1,80 @@
+chr6_ssto_hap7	4928567
+chr6_mcf_hap5	4833398
+chr6_cox_hap2	4795371
+chr6_mann_hap4	4683263
+chr6_apd_hap1	4622290
+chr6_qbl_hap6	4611984
+chr6_dbb_hap3	4610396
+chr17_ctg5_hap1	1680828
+chr5_ctg1_gl339449	1620324
+chr4_ctg9_hap1	590426
+chr17_gl383560	534288
+chr17_gl383558	457041
+chr8_gl383535	429806
+chr17_gl383561	406963
+chr10_gl383543	392792
+chr15_ctg8_gl383555	388773
+chr19_ctg3_gl383573	385657
+chr4_ctg6_gl383528	376187
+chr1_ctg31_gl383520	366579
+chr17_gl383559	338640
+chr9_gl339450	330164
+chr10_ctg5_gl383546	309802
+chr15_ctg4_gl383554	296527
+chr18_ctg1_gl383567	289831
+chr17_ctg1_gl383563	270261
+chr17_ctg4_gl383565	223995
+chr8_gl383536	203777
+chr21_ctg1_gl383579	201198
+chr18_ctg2_gl383571	198278
+chr16_ctg3_gl383556	192462
+chr19_ctg3_gl383576	188024
+chr12_ctg5_gl383551	184319
+chr1_ctg31_gl383518	182439
+chr3_ctg2_gl383526	180671
+chr10_ctg2_gl383545	179254
+chr5_ctg5_gl383531	173459
+chr3_gl383523	171362
+chr9_ctg35_gl383541	171286
+chr19_ctg3_gl383575	170227
+chr12_ctg2_gl383550	169178
+chr18_ctg2_gl383569	167950
+chr12_gl383548	165247
+chr18_ctg1_gl383570	164789
+chr4_ctg12_gl383527	164536
+chr9_ctg1_gl383539	162988
+chr18_ctg2_gl383572	159547
+chr22_ctg1_gl383582	158507
+chr19_ctg3_gl383574	155864
+chr12_ctg2_gl383553	154881
+chr11_ctg1_gl383547	154407
+chr2_ctg1_gl383521	143390
+chr12_ctg2_gl383552	138655
+chr17_ctg4_gl383564	133151
+chr20_ctg1_gl383577	128385
+chr10_gl383544	128378
+chr6_ctg5_gl383533	124736
+chr2_ctg12_gl383522	123821
+chr4_ctg9_gl383529	121345
+chr12_ctg2_gl383549	120804
+chr7_ctg6_gl383534	119383
+chr21_ctg1_gl383581	116690
+chr1_ctg31_gl383519	110268
+chr18_ctg2_gl383568	104552
+chr5_ctg2_gl383530	101241
+chr22_ctg2_gl383583	96924
+chr17_ctg4_gl383566	90219
+chr16_ctg3_gl383557	89672
+chr5_ctg1_gl383532	82728
+chr3_gl383524	78793
+chr21_ctg1_gl383580	74652
+chr9_ctg35_gl383540	71551
+chr3_gl383525	65063
+chr21_ctg1_gl383578	63917
+chr9_gl383537	62435
+chr9_ctg35_gl383542	60032
+chr1_gl383517	49352
+chr1_gl383516	49316
+chr9_gl383538	49281
+chr17_gl383562	45551
+chrM_rCRS	16569