Mercurial > repos > timpalpant > java_genomics_toolkit

diff galaxy-conf/DNAPropertyCalculator.xml @ 15:3e477c7e0e73 draft

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Update normalization tools to allow normalizing by chromosome (Z-scorer, scale, etc.) Add new tool to convert any interval file to Bed format. Miscellaneous bug fixes.
author timpalpant
date Sat, 09 Jun 2012 16:03:59 -0400
parents eb53be9a09f4
children
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--- a/galaxy-conf/DNAPropertyCalculator.xml	Sat May 19 10:40:16 2012 -0400
+++ b/galaxy-conf/DNAPropertyCalculator.xml	Sat Jun 09 16:03:59 2012 -0400
@@ -1,4 +1,4 @@
-<tool id="DNAPropertyCalculator" name="Calculate sequence-specific DNA properties" version="1.0.0">
+<tool id="DNAPropertyCalculator" name="Calculate sequence-specific DNA properties" version="2.0.0">
   <description>for a genome</description>
   <command interpreter="sh">galaxyToolRunner.sh dna.DNAPropertyCalculator -i 
     #if $refGenomeSource.genomeSource == "history":
@@ -85,12 +85,14 @@
     <test>
       <param name="genomeSource" value="history"/>
       <param name="ownFile" value="test.fasta"/>
+      <param name="property" value="Twist"/>
       <param name="N" value="false"/>
       <output name="output" file="twist.wig"/>
   	</test>
   	<test>
       <param name="genomeSource" value="history"/>
       <param name="ownFile" value="test.fasta"/>
+      <param name="property" value="Twist"/>
       <param name="N" value="true"/>
       <output name="output" file="twist.normalized.wig"/>
   	</test>