Mercurial > repos > timpalpant > java_genomics_toolkit
diff galaxy-conf/GaussianSmooth.xml @ 4:4b32ed5d4a1b
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author | timpalpant |
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date | Tue, 14 Feb 2012 00:59:33 -0500 |
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children | 81d5b81fb3c2 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/galaxy-conf/GaussianSmooth.xml Tue Feb 14 00:59:33 2012 -0500 @@ -0,0 +1,58 @@ +<tool id="GaussianSmoother" name="Gaussian smooth" version="1.0.0"> + <description>a (Big)Wig file</description> + <command interpreter="sh">galaxyToolRunner.sh wigmath.GaussianSmooth -i $input -s $S -o $output</command> + <inputs> + <param name="input" type="data" format="bigwig,wig" label="Smooth the data in" /> + <param name="S" type="integer" value="20" optional="true" label="Standard deviation of the Gaussian in base pairs" /> + </inputs> + <outputs> + <data format="wig" name="output" metadata_source="input" /> + </outputs> + <tests> + <!--<test> + <param name="input" value="test.wig"/> + <param name="dbkey" value="sacCer2"/> + <param name="S" value="20"/> + <param name="W" value="3"/> + <output name="output" file="smoother.output1"/> + </test> + <test> + <param name="input" value="test.bw"/> + <param name="dbkey" value="sacCer2"/> + <param name="S" value="20"/> + <param name="W" value="3"/> + <output name="output" file="smoother.output1"/> + </test> + <test> + <param name="input" value="test.wig"/> + <param name="dbkey" value="sacCer2"/> + <param name="S" value="10"/> + <param name="W" value="2"/> + <output name="output" file="smoother.output2"/> + </test> + <test> + <param name="input" value="test.bw"/> + <param name="dbkey" value="sacCer2"/> + <param name="S" value="10"/> + <param name="W" value="2"/> + <output name="output" file="smoother.output2"/> + </test> + <test> + <param name="input" value="test.wig"/> + <param name="dbkey" value="sacCer2"/> + <param name="S" value="50"/> + <param name="W" value="1"/> + <output name="output" file="smoother.output3"/> + </test> + <test> + <param name="input" value="test.bw"/> + <param name="dbkey" value="sacCer2"/> + <param name="S" value="5"/> + <param name="W" value="1"/> + <output name="output" file="smoother.output3"/> + </test>--> + </tests> + +<help> +</help> +</tool>