Mercurial > repos > timpalpant > java_genomics_toolkit

diff galaxy-conf/BaseAlignCounts.xml @ 5:604c98e58034

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author timpalpant
date Tue, 14 Feb 2012 13:04:54 -0500
parents 4b32ed5d4a1b
children 422ac2bbb274
line wrap: on
line diff
--- a/galaxy-conf/BaseAlignCounts.xml	Tue Feb 14 00:59:33 2012 -0500
+++ b/galaxy-conf/BaseAlignCounts.xml	Tue Feb 14 13:04:54 2012 -0500
@@ -1,6 +1,6 @@
 <tool id="BaseAlignCounts" name="Map coverage" version="1.0.0">
   <description>of sequencing reads</description>
-  <command interpreter="sh">galaxyToolRunner.sh ngs.BaseAlignCounts -i $input -g ${chromInfo} -x $X -o $output</command>
+  <command interpreter="sh">galaxyToolRunner.sh ngs.BaseAlignCounts -i $input -a ${chromInfo} -x $X -o $output</command>
   <inputs>
     <param name="input" type="data" format="bam,sam,bed,bedgraph" label="Sequencing reads" />
     <param name="X" type="integer" value="0" label="In silico extension (leave 0 for read length)" />