Mercurial > repos > timpalpant > java_genomics_toolkit

diff galaxy-conf/GeneTrackToBedGraph.xml @ 12:81d5b81fb3c2 draft

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Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
author timpalpant
date Wed, 25 Apr 2012 16:53:48 -0400
parents b1952a90d4bf
children eb53be9a09f4
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--- a/galaxy-conf/GeneTrackToBedGraph.xml	Mon Apr 09 11:50:23 2012 -0400
+++ b/galaxy-conf/GeneTrackToBedGraph.xml	Wed Apr 25 16:53:48 2012 -0400
@@ -10,12 +10,13 @@
 	
 <help>
 
-.. class:: warningmark
+This tool will sum the counts from the forward and reverse strands in a GeneTrack_ index to create a BedGraph file.
 
-This tool will sum the counts from the forward and reverse strands in a GeneTrack index to create a BedGraph file.
+.. _GeneTrack: http://atlas.bx.psu.edu/genetrack/docs/genetrack.html
 
 .. class:: warningmark
 	
 This tool requires GeneTrack formatted data. If you have tabular data that was not correctly autodetected, change the metadata by clicking on the pencil icon for the dataset.
+
 </help>
 </tool>