Mercurial > repos > timpalpant > java_genomics_toolkit

diff galaxy-conf/MovingAverageSmooth.xml @ 12:81d5b81fb3c2 draft

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Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
author timpalpant
date Wed, 25 Apr 2012 16:53:48 -0400
parents 9266d807ca85
children 3e477c7e0e73
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--- a/galaxy-conf/MovingAverageSmooth.xml	Mon Apr 09 11:50:23 2012 -0400
+++ b/galaxy-conf/MovingAverageSmooth.xml	Wed Apr 25 16:53:48 2012 -0400
@@ -54,5 +54,18 @@
   </tests>
   
 <help>
+  
+This tool smooths genomic data with a mean_ filter of the specified width.
+
+.. _mean: http://en.wikipedia.org/wiki/Moving_average
+
+.. class:: warningmark
+
+Note that for the moving average to be perfectly symmetric, the window should be an odd number of base pairs.
+
+.. class:: infomark
+
+**TIP:** If your dataset does not appear in the pulldown menu, it means that it is not in Wig or BigWig format. Use "edit attributes" to set the correct format if it was not detected correctly.
+  
 </help>
 </tool>