Mercurial > repos > timpalpant > java_genomics_toolkit

diff galaxy-conf/Scale.xml @ 12:81d5b81fb3c2 draft

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Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
author timpalpant
date Wed, 25 Apr 2012 16:53:48 -0400
parents 4b32ed5d4a1b
children 3e477c7e0e73
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--- a/galaxy-conf/Scale.xml	Mon Apr 09 11:50:23 2012 -0400
+++ b/galaxy-conf/Scale.xml	Wed Apr 25 16:53:48 2012 -0400
@@ -48,5 +48,12 @@
   </tests>
   
   <help>
+
+This tool will multiply all values in a Wig file by a scalar. For example, this can be used to normalize to read depth by multiplying by 1/(# reads). By default, the tool will scale to 1/(mean value), which is equivalent to dividing by coverage and multiplying by the size of the genome. The resulting output file should have mean 1.
+    
+.. class:: infomark
+
+**TIP:** If your dataset does not appear in the pulldown menu, it means that it is not in Wig or BigWig format. Use "edit attributes" to set the correct format if it was not detected correctly.
+
   </help>
 </tool>