--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/galaxy-conf/GeneTrackToWig.xml	Tue Jun 19 22:15:09 2012 -0400
@@ -0,0 +1,39 @@
+<tool id="GeneTrackToWig" name="GeneTrack to Wig" version="1.1.0">
+  <description>converter</description>
+  <command interpreter="sh">galaxyToolRunner.sh converters.GeneTrackToWig -i $input -s $shift $zero -a ${chromInfo} -o $output</command>
+  <inputs>
+      <param name="input" type="data" format="tabular" label="Input GeneTrack index" />
+      <param name="shift" type="integer" value="0" optional="true" label="Shift +/- strand counts by this amount when merging" />
+  	  <param name="zero" type="boolean" checked="false" truevalue="-z" falsevalue="" label="Assume zero where there is no data (default is NaN)" />
+  </inputs>
+  <outputs>
+      <data name="output" format="wig" metadata_source="input" />
+  </outputs>
+	<tests>
+	  <test>
+	    <param name="input" value="test.genetrack" ftype="tabular"/>
+	    <param name="shift" value="73"/>
+	    <param name="zero" value="true"/>
+	    <param name="chromInfo" value="sacCer2"/>
+	    <output name="output" file="geneTrackToWig1.wig"/>
+    </test>
+    <test>
+	    <param name="input" value="test.genetrack" ftype="tabular"/>
+	    <param name="shift" value="0"/>
+	    <param name="zero" value="false"/>
+	    <param name="chromInfo" value="sacCer2"/>
+	    <output name="output" file="geneTrackToWig2.wig"/>
+    </test>
+  </tests>
+<help>
+  
+This tool will convert GeneTrack_ format files into Wig files, optionally offsetting the + and - strand counts by a specified value before merging them.
+
+.. _GeneTrack: http://atlas.bx.psu.edu/genetrack/docs/genetrack.html
+
+.. class:: warningmark
+	
+This tool requires GeneTrack formatted data. If you have tabular data that was not correctly autodetected, change the metadata by clicking on the pencil icon for the dataset.
+
+</help>
+</tool>