Mercurial > repos > timpalpant > java_genomics_toolkit

diff galaxy-conf/GeneTrackToWig.xml @ 11:b1952a90d4bf

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author timpalpant
date Mon, 09 Apr 2012 11:50:23 -0400
parents
children 81d5b81fb3c2
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/galaxy-conf/GeneTrackToWig.xml	Mon Apr 09 11:50:23 2012 -0400
@@ -0,0 +1,18 @@
+<tool id="GeneTrackToWig" name="GeneTrack to Wig" version="1.0.0">
+  <description>converter</description>
+  <command interpreter="sh">galaxyToolRunner.sh converters.GeneTrackToWig -i $input $zero -a ${chromInfo} -o $output</command>
+  <inputs>
+      <param name="input" type="data" format="genetrack" label="Input GeneTrack index" />
+  	  <param name="zero" type="boolean" checked="false" truevalue="-z" falsevalue="" label="Assume zero where there is no data (default is NaN)" />
+  </inputs>
+  <outputs>
+      <data name="output" format="wig" metadata_source="input" />
+  </outputs>
+	
+<help>
+
+.. class:: warningmark
+	
+This tool requires GeneTrack formatted data. If you have tabular data that was not correctly autodetected, change the metadata by clicking on the pencil icon for the dataset.
+</help>
+</tool>