Mercurial > repos > timpalpant > java_genomics_toolkit
diff galaxy-conf/PairOverlappingNucleosomes.xml @ 18:b2a69d34385a draft
Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
author | timpalpant |
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date | Fri, 15 Jun 2012 15:07:33 -0400 |
parents | |
children | b43c420a6135 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/galaxy-conf/PairOverlappingNucleosomes.xml Fri Jun 15 15:07:33 2012 -0400 @@ -0,0 +1,18 @@ +<tool id="PairNukes" name="Pair nucleosomes" version="1.0.0"> + <description>by overlap</description> + <command interpreter="sh">galaxyToolRunner.sh nucleosomes.PairOverlappingNucleosomes -a $input1 -b $input2 -m $N -o $output</command> + <inputs> + <param name="input1" type="data" format="tabular" label="Nucleosome calls 1" /> + <param name="input2" type="data" format="tabular" label="Nucleosome calls 2" /> + <param name="N" type="integer" value="73" label="Minimum overlap (bp)" /> + </inputs> + <outputs> + <data name="output" format="tabular" /> + </outputs> + +<help> + +This tool will pair overlapping nucleosomes from two sets of nucleosome calls. In the event that multiple calls overlap, the one with the largest overlap is selected as a match. + +</help> +</tool>