Mercurial > repos > timpalpant > java_genomics_toolkit

diff galaxy-conf/RollingReadLength.xml @ 25:b43c420a6135 draft default tip

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Incorporate fix: https://github.com/timpalpant/java-genomics-toolkit/commit/9a6c61b7c6b8d85a1cd3f595eed657a537b85dc9
author timpalpant
date Sat, 09 Feb 2019 14:02:24 -0500
parents 9d56b5b85740
children
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--- a/galaxy-conf/RollingReadLength.xml	Tue Jun 19 22:15:09 2012 -0400
+++ b/galaxy-conf/RollingReadLength.xml	Sat Feb 09 14:02:24 2019 -0500
@@ -1,6 +1,6 @@
 <tool id="RollingReadLength" name="Compute mean fragment length" version="1.1.0">
   <description>over each locus</description>
-  <command interpreter="sh">galaxyToolRunner.sh ngs.RollingReadLength -i $input -a ${chromInfo} -o $output</command>
+  <command interpreter="bash">galaxyToolRunner.sh ngs.RollingReadLength -i $input -a ${chromInfo} -o $output</command>
   <inputs>
       <param format="sam,bam,bed,bedgraph" name="input" type="data" label="Mapped reads" />
   </inputs>