diff galaxy-conf/GeneTrackToWig.xml @ 13:eb53be9a09f4 draft

Uploaded
author timpalpant
date Sat, 19 May 2012 10:36:45 -0400
parents 81d5b81fb3c2
children 3e477c7e0e73
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--- a/galaxy-conf/GeneTrackToWig.xml	Wed Apr 25 16:53:48 2012 -0400
+++ b/galaxy-conf/GeneTrackToWig.xml	Sat May 19 10:36:45 2012 -0400
@@ -2,14 +2,29 @@
   <description>converter</description>
   <command interpreter="sh">galaxyToolRunner.sh converters.GeneTrackToWig -i $input -s $shift $zero -a ${chromInfo} -o $output</command>
   <inputs>
-      <param name="input" type="data" format="genetrack" label="Input GeneTrack index" />
+      <param name="input" type="data" format="tabular" label="Input GeneTrack index" />
       <param name="shift" type="integer" value="0" optional="true" label="Shift +/- strand counts by this amount when merging" />
   	  <param name="zero" type="boolean" checked="false" truevalue="-z" falsevalue="" label="Assume zero where there is no data (default is NaN)" />
   </inputs>
   <outputs>
       <data name="output" format="wig" metadata_source="input" />
   </outputs>
-	
+	<tests>
+	  <test>
+	    <param name="input" value="test.genetrack" ftype="tabular"/>
+	    <param name="shift" value="73"/>
+	    <param name="zero" value="true"/>
+	    <param name="chromInfo" value="sacCer2"/>
+	    <output name="output" file="geneTrackToWig1.wig"/>
+    </test>
+    <test>
+	    <param name="input" value="test.genetrack" ftype="tabular"/>
+	    <param name="shift" value="0"/>
+	    <param name="zero" value="false"/>
+	    <param name="chromInfo" value="sacCer2"/>
+	    <output name="output" file="geneTrackToWig2.wig"/>
+    </test>
+  </tests>
 <help>
   
 This tool will convert GeneTrack_ format files into Wig files, optionally offsetting the + and - strand counts by a specified value before merging them.