Mercurial > repos > timpalpant > java_genomics_toolkit
diff galaxy-conf/GeneTrackToWig.xml @ 13:eb53be9a09f4 draft
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author | timpalpant |
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date | Sat, 19 May 2012 10:36:45 -0400 |
parents | 81d5b81fb3c2 |
children | 3e477c7e0e73 |
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--- a/galaxy-conf/GeneTrackToWig.xml Wed Apr 25 16:53:48 2012 -0400 +++ b/galaxy-conf/GeneTrackToWig.xml Sat May 19 10:36:45 2012 -0400 @@ -2,14 +2,29 @@ <description>converter</description> <command interpreter="sh">galaxyToolRunner.sh converters.GeneTrackToWig -i $input -s $shift $zero -a ${chromInfo} -o $output</command> <inputs> - <param name="input" type="data" format="genetrack" label="Input GeneTrack index" /> + <param name="input" type="data" format="tabular" label="Input GeneTrack index" /> <param name="shift" type="integer" value="0" optional="true" label="Shift +/- strand counts by this amount when merging" /> <param name="zero" type="boolean" checked="false" truevalue="-z" falsevalue="" label="Assume zero where there is no data (default is NaN)" /> </inputs> <outputs> <data name="output" format="wig" metadata_source="input" /> </outputs> - + <tests> + <test> + <param name="input" value="test.genetrack" ftype="tabular"/> + <param name="shift" value="73"/> + <param name="zero" value="true"/> + <param name="chromInfo" value="sacCer2"/> + <output name="output" file="geneTrackToWig1.wig"/> + </test> + <test> + <param name="input" value="test.genetrack" ftype="tabular"/> + <param name="shift" value="0"/> + <param name="zero" value="false"/> + <param name="chromInfo" value="sacCer2"/> + <output name="output" file="geneTrackToWig2.wig"/> + </test> + </tests> <help> This tool will convert GeneTrack_ format files into Wig files, optionally offsetting the + and - strand counts by a specified value before merging them.