Mercurial > repos > timpalpant > java_genomics_toolkit

diff galaxy-conf/Phasogram.xml @ 13:eb53be9a09f4 draft

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author timpalpant
date Sat, 19 May 2012 10:36:45 -0400
parents 81d5b81fb3c2
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--- a/galaxy-conf/Phasogram.xml	Wed Apr 25 16:53:48 2012 -0400
+++ b/galaxy-conf/Phasogram.xml	Sat May 19 10:36:45 2012 -0400
@@ -11,7 +11,7 @@
   
   <help>
 
-This tool calculates the phase distribution of sequencing data. It can be used to identify genome-wide periodicities. Phase counts are aggregated for each base pair across the genome. The tool is a reimplementation of the algorithm described in (Valouev et al. 2011).
+This tool calculates the phase distribution of sequencing data. It can be used to identify genome-wide periodicities. Phase counts are aggregated for each base pair across the genome. This is equivalent to summing the autocovariance of a sliding window across the genome. The tool is a reimplementation of the algorithm described in (Valouev et al. 2011).
 
 .. class:: infomark