view galaxy-conf/Divide.xml @ 15:3e477c7e0e73 draft

Update normalization tools to allow normalizing by chromosome (Z-scorer, scale, etc.) Add new tool to convert any interval file to Bed format. Miscellaneous bug fixes.
author timpalpant
date Sat, 09 Jun 2012 16:03:59 -0400
parents 81d5b81fb3c2
children
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<tool id="WigDivide" name="Divide" version="1.1.0">
  <description>two (Big)Wig files</description>
  <command interpreter="sh">galaxyToolRunner.sh wigmath.Divide -n $dividend -d $divisor -o $output</command>
  <inputs>
    <param format="bigwig,wig" name="dividend" type="data" label="File 1 (dividend)" />
    <param format="bigwig,wig" name="divisor" type="data" label="File 2 (divisor)" />
  </inputs>
  <outputs>
    <data format="wig" name="output" metadata_source="dividend" />
  </outputs>
  <tests>
      <test>
	    <param name="dividend" value="wigmath1.wig"/>
	    <param name="divisor" value="wigmath2.wig"/>
	    <output name="output" file="divide1.wig"/>
	  </test>
	  <test>
	    <param name="dividend" value="wigmath1.wig"/>
	    <param name="divisor" value="wigmath3.bw"/>
	    <output name="output" file="divide2.wig"/>
	  </test>
	  <test>
	    <param name="dividend" value="wigmath3.bw"/>
	    <param name="divisor" value="wigmath2.bw"/>
	    <output name="output" file="divide3.wig"/>
	  </test>
  </tests>
  
  <help>

.. class:: infomark

**TIP:** If your dataset does not appear in the pulldown menu, it means that it is not in Wig or BigWig format. Use "edit attributes" to set the correct format if it was not detected correctly.

  </help>
</tool>