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Update normalization tools to allow normalizing by chromosome (Z-scorer, scale, etc.) Add new tool to convert any interval file to Bed format. Miscellaneous bug fixes.
author timpalpant
date Sat, 09 Jun 2012 16:03:59 -0400
parents 4fc118372ae7
children
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log4j.rootLogger=info, stdout

log4j.appender.stdout=org.apache.log4j.ConsoleAppender
log4j.appender.stdout.layout=org.apache.log4j.PatternLayout

# Pattern to output the caller's file name and line number.
log4j.appender.stdout.layout.ConversionPattern=%m%n

# Only output errors from the BigWig library
log4j.logger.org.broad.igv.bbfile=ERROR
# Only output errors from java-genomics-io
log4j.logger.edu.unc.genomics.io=ERROR