<tool id="NRLCalculator" name="Compute the NRL" version="1.0.0">
  <description>from nucleosome calls</description>
  <command interpreter="sh">galaxyToolRunner.sh nucleosome.NRLCalculator -i $input -l $windows -o $output</command>
  <inputs>
      <param format="tabular" name="input" type="data" label="Nucleosome calls" />
      <param format="bed,bedgraph,gff" name="windows" type="data" label="List of intervals/genes" />
  </inputs>
  <outputs>
      <data format="tabular" name="output" />
  </outputs>
  
<help>
.. class:: warningmark

This tool requires a set of nucleosome calls as input.
</help>
</tool>