<tool id="Phasogram" name="Make phasogram" version="1.0.0">
  <description>of dyads</description>
  <command interpreter="ruby">phasogram.rb -i $input -m $max -o $output</command>
  <inputs>
    <param name="input" type="data" format="bigwig,wig" label="Dyads BigWig file" />
    <param name="max" type="integer" value="1000" label="Maximum phase shift (bp)" />
  </inputs>
  <outputs>
    <data name="output" format="tabular" />
  </outputs>
  
  <help>
    .. class:: warningmark
    
    This tool requires mapped dyads in BigWig format.
  </help>
</tool>