Mercurial > repos > timpalpant > java_genomics_toolkit
view galaxy-conf/galaxyToolRunner.sh @ 12:81d5b81fb3c2 draft
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
author | timpalpant |
---|---|
date | Wed, 25 Apr 2012 16:53:48 -0400 |
parents | 4b32ed5d4a1b |
children | eb53be9a09f4 |
line wrap: on
line source
#!/usr/bin/env bash if [ $# -eq 0 ] then echo "USAGE: galaxyToolRunner.sh APPNAME [ARGS]"; exit; fi if [ "$1" = "list" ] then find src/edu/unc/genomics/**/*.java -exec basename -s .java {} \; fi DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )" java -Dlog4j.configuration=log4j.properties -cp $DIR:$DIR/../build:$DIR/../dist/*:$DIR/../lib/* edu.unc.genomics."$@"