Mercurial > repos > timpalpant > java_genomics_toolkit
view galaxy-conf/GeneTrackToBedGraph.xml @ 24:a77e126ae856 draft
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author | timpalpant |
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date | Tue, 19 Jun 2012 22:15:09 -0400 |
parents | 9d56b5b85740 |
children | b43c420a6135 |
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<tool id="GeneTrackToBedGraph" name="GeneTrack to BedGraph" version="1.1.0"> <description>converter</description> <command interpreter="sh">galaxyToolRunner.sh converters.GeneTrackToBedGraph -i $input -o $output</command> <inputs> <param name="input" type="data" format="tabular" label="Input GeneTrack index" /> </inputs> <outputs> <data name="output" format="bedgraph" metadata_source="input" /> </outputs> <tests> <test> <param name="input" value="test.genetrack" ftype="tabular"/> <output name="output" file="geneTrackToBedGraph.bedGraph"/> </test> </tests> <help> This tool will sum the counts from the forward and reverse strands in a GeneTrack_ index to create a BedGraph file. .. _GeneTrack: http://atlas.bx.psu.edu/genetrack/docs/genetrack.html .. class:: warningmark This tool requires GeneTrack formatted data. If you have tabular data that was not correctly autodetected, change the metadata by clicking on the pencil icon for the dataset. </help> </tool>