<tool id="WigSummary" name="Output a summary" version="1.1.0">
  <description>of a (Big)Wig file</description>
  <command interpreter="sh">galaxyToolRunner.sh wigmath.Summary -i $input -o $output</command>
  <inputs>
      <param format="bigwig,wig" name="input" type="data" label="(Big)Wig file" />
  </inputs>
  <outputs>
      <data format="txt" name="output" />
  </outputs>
  <tests>
      <test>
      	<param name="input" value="wigmath1.wig"/>
      	<output name="output" file="wigsummary1.txt"/>
      </test>
      <test>
      	<param name="input" value="test.wig"/>
      	<output name="output" file="wigsummary2.txt"/>
      </test>
      <test>
      	<param name="input" value="test.bw"/>
      	<output name="output" file="wigsummary3.txt"/>
      </test>
  </tests>
  
<help>
  
This tool will output a summary of a Wig or BigWig file, including information about the chromosomes and types of contigs in the Wig file, as well as basic descriptive statistics.

-----

**Example:**

The following is an example of the output of this tool ::

    ASCII Text Wiggle file: track type=wiggle_0
    Chromosomes:
      2micron start=1 stop=6318
      chrVI start=1 stop=270148
      chrI start=1 stop=230208
      chrIII start=1 stop=316617
      chrXII start=1 stop=1078175
      chrXV start=1 stop=1091289
      chrXVI start=1 stop=948062
      chrII start=1 stop=813178
      chrVIII start=1 stop=562643
      chrX start=1 stop=745742
      chrXIII start=1 stop=924429
      chrV start=1 stop=576869
      chrXIV start=1 stop=784333
      chrIV start=1 stop=1531919
      chrXI start=1 stop=666454
      chrIX start=1 stop=439885
      chrM start=1 stop=85779
      chrVII start=1 stop=1090947
    Contigs:
      fixedStep chrom=2micron start=1 span=1 step=1
      fixedStep chrom=chrVI start=1 span=1 step=1
      fixedStep chrom=chrI start=1 span=1 step=1
      fixedStep chrom=chrIII start=1 span=1 step=1
      fixedStep chrom=chrXII start=1 span=1 step=1
      fixedStep chrom=chrXVI start=1 span=1 step=1
      fixedStep chrom=chrXV start=1 span=1 step=1
      fixedStep chrom=chrII start=1 span=1 step=1
      fixedStep chrom=chrVIII start=1 span=1 step=1
      fixedStep chrom=chrXIII start=1 span=1 step=1
      fixedStep chrom=chrX start=1 span=1 step=1
      fixedStep chrom=chrV start=1 span=1 step=1
      fixedStep chrom=chrXIV start=1 span=1 step=1
      fixedStep chrom=chrIV start=1 span=1 step=1
      fixedStep chrom=chrXI start=1 span=1 step=1
      fixedStep chrom=chrIX start=1 span=1 step=1
      fixedStep chrom=chrM start=1 span=1 step=1
      fixedStep chrom=chrVII start=1 span=1 step=1
    Basic Statistics:
      Mean:               1.000000164913575
      Standard Deviation: 1.8843731523620193
      Total:              1.2162997005843896E7
      Bases Covered:      12162995
      Min value:          0.0
      Max value:          277.98996
  
</help>
</tool>