Mercurial > repos > timpalpant > java_genomics_toolkit
view galaxy-conf/galaxyToolRunner.sh @ 17:ace7855c1017 draft
Add back tool_data_table_conf.xml.sample since apparently it's still needed.
author | timpalpant |
---|---|
date | Sat, 09 Jun 2012 16:10:42 -0400 |
parents | eb53be9a09f4 |
children |
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#!/usr/bin/env bash if [ $# -eq 0 ] then echo "USAGE: galaxyToolRunner.sh APPNAME [ARGS]"; exit; fi # Verify that the user has Java 7 installed # Otherwise there will be an obscure UnsupportedClassVersion error version=$(java -version 2>&1 | awk -F '"' '/version/ {print $2}') if [[ "$version" < "1.7" ]]; then echo "Need Java 7 or greater. You have Java $version installed." exit fi DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )" java -Dlog4j.configuration=log4j.properties -cp $DIR:$DIR/../build:$DIR/../dist/*:$DIR/../lib/* edu.unc.genomics."$@"