Mercurial > repos > timpalpant > java_genomics_toolkit
view galaxy-conf/BaseAlignCounts.xml @ 10:d063d22f4e80
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author | timpalpant |
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date | Sat, 17 Mar 2012 08:11:55 -0400 |
parents | 9266d807ca85 |
children | 81d5b81fb3c2 |
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<tool id="BaseAlignCounts" name="Map coverage" version="1.0.0"> <description>of sequencing reads</description> <command interpreter="sh">galaxyToolRunner.sh ngs.BaseAlignCounts -i $input -a ${chromInfo} -x $X -o $output</command> <inputs> <param name="input" type="data" format="sam,bam,bed,bedgraph" label="Sequencing reads" /> <param name="X" type="integer" value="-1" label="In silico extension (-1 for read length)" /> </inputs> <outputs> <data name="output" format="wig" /> </outputs> <help> .. class:: warningmark This tool requires sequencing reads in SAM, BAM, or Bed format. </help> </tool>