Mercurial > repos > timpalpant > java_genomics_toolkit
view galaxyToolConf.xml @ 2:e16016635b2a
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author | timpalpant |
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date | Mon, 13 Feb 2012 22:12:06 -0500 |
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<!-- Add to galaxy/tool_conf.xml within the <toolbox></toolbox> section --> <label name="Java Genomics Toolkit" /> <section name="Converters" id="java-genomics-toolkit-converters"> <tool file="java-genomics-toolkit/galaxy-conf/IntervalToWig.xml" /> <tool file="java-genomics-toolkit/galaxy-conf/RomanNumeralize.xml" /> </section> <section name="Nucleosomes" id="java-genomics-toolkit-nucleosomes"> <tool file="java-genomics-toolkit/galaxy-conf/FindBoundaryNucleosomes.xml" /> <tool file="java-genomics-toolkit/galaxy-conf/GreedyCaller.xml" /> <tool file="java-genomics-toolkit/galaxy-conf/MapDyads.xml" /> <tool file="java-genomics-toolkit/galaxy-conf/NRLCalculator.xml" /> <tool file="java-genomics-toolkit/galaxy-conf/Phasogram.xml" /> </section> <section name="NGS" id="java-genomics-toolkit-ngs"> <tool file="java-genomics-toolkit/other-tools/Autocorrelation.xml" /> <tool file="java-genomics-toolkit/galaxy-conf/BaseAlignCounts.xml" /> <tool file="java-genomics-toolkit/galaxy-conf/FindAbsoluteMaxima.xml" /> <tool file="java-genomics-toolkit/galaxy-conf/IntervalLengthDistribution.xml" /> <tool file="java-genomics-toolkit/galaxy-conf/IntervalStats.xml" /> <tool file="java-genomics-toolkit/galaxy-conf/PowerSpectrum.xml" /> <tool file="java-genomics-toolkit/galaxy-conf/RollingReadLength.xml" /> </section> <section name="WigMath" id="java-genomics-toolkit-wigmath"> <tool file="java-genomics-toolkit/galaxy-conf/Add.xml" /> <tool file="java-genomics-toolkit/galaxy-conf/Average.xml" /> <tool file="java-genomics-toolkit/galaxy-conf/Divide.xml" /> <tool file="java-genomics-toolkit/galaxy-conf/GaussianSmooth.xml" /> <tool file="java-genomics-toolkit/galaxy-conf/LogTransform.xml" /> <tool file="java-genomics-toolkit/galaxy-conf/MovingAverageSmooth.xml" /> <tool file="java-genomics-toolkit/galaxy-conf/Multiply.xml" /> <tool file="java-genomics-toolkit/galaxy-conf/Scale.xml" /> <tool file="java-genomics-toolkit/galaxy-conf/Subtract.xml" /> <tool file="java-genomics-toolkit/galaxy-conf/WigSummary.xml" /> <tool file="java-genomics-toolkit/galaxy-conf/ZScore.xml" /> </section> <section name="Visualization" id="java-genomics-toolkit-visualization"> <tool file="java-genomics-toolkit/galaxy-conf/IntervalAverager.xml" /> <tool file="java-genomics-toolkit/galaxy-conf/KMeans.xml" /> <tool file="java-genomics-toolkit/galaxy-conf/MatrixAligner.xml" /> <tool file="java-genomics-toolkit/galaxy-conf/StripMatrix.xml" /> </section>