<tool id="GeneTrackToBedGraph" name="GeneTrack to BedGraph" version="1.1.0">
  <description>converter</description>
  <command interpreter="bash">galaxyToolRunner.sh converters.GeneTrackToBedGraph -i $input -o $output</command>
  <inputs>
      <param name="input" type="data" format="tabular" label="Input GeneTrack index" />
  </inputs>
  <outputs>
      <data name="output" format="bedgraph" metadata_source="input" />
  </outputs>
	<tests>
	  <test>
	    <param name="input" value="test.genetrack" ftype="tabular"/>
	    <output name="output" file="geneTrackToBedGraph.bedGraph"/>
    </test>
  </tests>
<help>

This tool will sum the counts from the forward and reverse strands in a GeneTrack_ index to create a BedGraph file.

.. _GeneTrack: http://atlas.bx.psu.edu/genetrack/docs/genetrack.html

.. class:: warningmark
	
This tool requires GeneTrack formatted data. If you have tabular data that was not correctly autodetected, change the metadata by clicking on the pencil icon for the dataset.

</help>
</tool>