java_genomics_toolkit: revision graph

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Reuploaded to see if tools get loaded correctly this time. draft
Fri, 15 Jun 2012 15:10:26 -0400, by timpalpant
Delete all files draft
Fri, 15 Jun 2012 15:10:00 -0400, by timpalpant
Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool. draft
Fri, 15 Jun 2012 15:07:33 -0400, by timpalpant
Add back tool_data_table_conf.xml.sample since apparently it's still needed. draft
Sat, 09 Jun 2012 16:10:42 -0400, by timpalpant
Add sam_fa_indices.loc.sample to enable DNAProperty and FindNMer tools that require samtools indices to be installed. draft
Sat, 09 Jun 2012 16:06:25 -0400, by timpalpant
Update normalization tools to allow normalizing by chromosome (Z-scorer, scale, etc.) Add new tool to convert any interval file to Bed format. Miscellaneous bug fixes. draft
Sat, 09 Jun 2012 16:03:59 -0400, by timpalpant

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