Mercurial > repos > triasteran > catdc_docker_test
comparison tmp2/docker_test.xml @ 2:2389c0a6e5f0 draft
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| author | triasteran |
|---|---|
| date | Tue, 08 Mar 2022 10:59:24 +0000 |
| parents | |
| children | f65406ae38fb |
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| 1:3dfb556105bd | 2:2389c0a6e5f0 |
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| 1 <tool id="catdc" name="Concatenate datasets (in docker)"> | |
| 2 <description>tail-to-head</description> | |
| 3 <requirements> | |
| 4 <container type="docker">alpine:3.14</container> | |
| 5 </requirements> | |
| 6 <command> | |
| 7 echo "Galaxy slots passed through contain as \$GALAXY_SLOTS"; | |
| 8 cat $input1 | |
| 9 #for $q in $queries | |
| 10 ${q.input2} | |
| 11 #end for | |
| 12 > $out_file1; | |
| 13 echo "Work dir output" > working_file | |
| 14 | |
| 15 </command> | |
| 16 <inputs> | |
| 17 <param name="input1" type="data" label="Concatenate Dataset"/> | |
| 18 <repeat name="queries" title="Dataset"> | |
| 19 <param name="input2" type="data" label="Select" /> | |
| 20 </repeat> | |
| 21 </inputs> | |
| 22 <outputs> | |
| 23 <data name="out_file1" format="input" metadata_source="input1"/> | |
| 24 <data name="out_file2" format="txt" from_work_dir="working_file" /> | |
| 25 </outputs> | |
| 26 <help> | |
| 27 </help> | |
| 28 </tool> |