Mercurial > repos > triasteran > catdc_docker_test

comparison tmp2/docker_test.xml @ 6:316a0be8dc9a draft

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author triasteran
date Tue, 08 Mar 2022 11:35:06 +0000
parents 3548e4ba820f
children 2a8b693c33d9
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5:3548e4ba820f 6:316a0be8dc9a
1 <tool id="catdc" name="Concatenate datasets (in docker)" version="2.11"> 1 <tool id="catdc" name="Concatenate datasets (in docker)" version="2.12">
2 <description>tail-to-head</description> 2 <description>tail-to-head</description>
3 <requirements> 3 <requirements>
4 <container type="docker">triasteran/bowite0127:latest</container> 4 <container type="docker">triasteran/bowite0127:latest</container>
5 </requirements> 5 </requirements>
6 <command> 6 <command>
9 #for $q in $queries 9 #for $q in $queries
10 ${q.input2} 10 ${q.input2}
11 #end for 11 #end for
12 &gt; $out_file1; 12 &gt; $out_file1;
13 echo "Work dir output" &gt; working_file 13 echo "Work dir output" &gt; working_file
14 bowtie --version 14 bowtie --version > $out_file1
15 python2 --version 15 python2 --version > $out_file1
16 bowtie-build --version 16 bowtie-build --version $out_file1
17 </command> 17 </command>
18 <inputs> 18 <inputs>
19 <param name="input1" type="data" label="Concatenate Dataset"/> 19 <param name="input1" type="data" label="Concatenate Dataset"/>
20 <repeat name="queries" title="Dataset"> 20 <repeat name="queries" title="Dataset">
21 <param name="input2" type="data" label="Select" /> 21 <param name="input2" type="data" label="Select" />