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comparison smalt/Dockerfile @ 9:81f36745bc9d draft

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author triasteran
date Tue, 08 Mar 2022 11:43:08 +0000
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8:7e70e7a0f4bb 9:81f36745bc9d
1 # Galaxy - SMALT
2 # From https://toolshed.g2.bx.psu.edu/repository/view_repository?sort=Repository.name&operation=view_or_manage_repository&changeset_revision=54855bd8d107&id=ec70d959cc6d865d
3
4 FROM debian:wheezy
5
6 MAINTAINER Aaron Petkau, aaron.petkau@gmail.com
7
8 # make sure the package repository is up to date
9 RUN DEBIAN_FRONTEND=noninteractive apt-get -qq update
10
11 RUN DEBIAN_FRONTEND=noninteractive apt-get install -y python
12 RUN DEBIAN_FRONTEND=noninteractive apt-get install -y wget
13 RUN DEBIAN_FRONTEND=noninteractive apt-get install -y mercurial
14
15 RUN mkdir /tmp/smalt
16 WORKDIR /tmp/smalt
17
18 RUN wget ftp://ftp.sanger.ac.uk/pub4/resources/software/smalt/smalt-0.7.3.tgz
19 RUN tar -xvvzf smalt-0.7.3.tgz
20 RUN cp smalt-0.7.3/smalt_x86_64 /usr/bin/smalt_unknown
21
22 RUN hg clone https://toolshed.g2.bx.psu.edu/repos/cjav/smalt smalt_deps
23 RUN cp smalt_deps/smalt_wrapper.py /usr/bin/smalt_wrapper.py
24 RUN chmod a+x /usr/bin/smalt_wrapper.py
25
26 RUN apt-get clean && rm -rf /tmp/smalt && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*