Mercurial > repos > triasteran > catdc_docker_test
comparison smalt/tool_data_table_conf.xml.sample @ 10:b75227b2833e draft default tip
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| author | triasteran |
|---|---|
| date | Tue, 08 Mar 2022 11:44:09 +0000 |
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| 9:81f36745bc9d | 10:b75227b2833e |
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| 1 <!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc--> | |
| 2 <tables> | |
| 3 <!-- Locations of all fasta files under genome directory --> | |
| 4 <table name="all_fasta" comment_char="#"> | |
| 5 <columns>value, dbkey, name, path</columns> | |
| 6 <file path="tool-data/all_fasta.loc" /> | |
| 7 </table> | |
| 8 <!-- Locations of indexes in the Bowtie2 mapper format --> | |
| 9 <table name="bowtie2_indexes" comment_char="#"> | |
| 10 <columns>value, dbkey, name, path</columns> | |
| 11 <file path="tool-data/bowtie2_indices.loc" /> | |
| 12 </table> | |
| 13 <!-- Locations of indexes in the Bowtie2 mapper format for TopHat2 to use --> | |
| 14 <table name="tophat2_indexes" comment_char="#"> | |
| 15 <columns>value, dbkey, name, path</columns> | |
| 16 <file path="tool-data/tophat2_indices.loc" /> | |
| 17 </table> | |
| 18 </tables> |