Mercurial > repos > triasteran > catdc_docker_test
diff tmp2/docker_test.xml @ 2:2389c0a6e5f0 draft
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author | triasteran |
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date | Tue, 08 Mar 2022 10:59:24 +0000 |
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children | f65406ae38fb |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tmp2/docker_test.xml Tue Mar 08 10:59:24 2022 +0000 @@ -0,0 +1,28 @@ +<tool id="catdc" name="Concatenate datasets (in docker)"> + <description>tail-to-head</description> + <requirements> + <container type="docker">alpine:3.14</container> + </requirements> + <command> + echo "Galaxy slots passed through contain as \$GALAXY_SLOTS"; + cat $input1 + #for $q in $queries + ${q.input2} + #end for + > $out_file1; + echo "Work dir output" > working_file + + </command> + <inputs> + <param name="input1" type="data" label="Concatenate Dataset"/> + <repeat name="queries" title="Dataset"> + <param name="input2" type="data" label="Select" /> + </repeat> + </inputs> + <outputs> + <data name="out_file1" format="input" metadata_source="input1"/> + <data name="out_file2" format="txt" from_work_dir="working_file" /> + </outputs> + <help> + </help> +</tool>