# HG changeset patch
# User triasteran
# Date 1646664415 0
# Node ID 46274846fc0c5b0471257c6ae57f0b9e3346ea2b

Uploaded

diff -r 000000000000 -r 46274846fc0c PY2_PATCH/py2_patch.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/PY2_PATCH/py2_patch.xml	Mon Mar 07 14:46:55 2022 +0000
@@ -0,0 +1,24 @@
+<tool id="py2_patch_test" name="py2" version="0.1.0">
+    <requirements>
+       <requirement type="package" version="1.0.0">bowtie</requirement>
+    </requirements>
+   <command detect_errors="exit_code"><![CDATA[
+       python2 '$__tool_directory__/script.py' -a '$input1' > '$output1'
+   ]]></command>
+   <inputs>
+       <param type="data" name="input1" format="txt" />
+   </inputs>
+   <outputs>
+       <data name="output1" format="txt" />
+   </outputs>
+<tests>
+       <test>
+           <param name="input1" value="input.txt"/>
+           <output name="output1" file="output.txt"/>
+       </test>
+   </tests>
+   <help><![CDATA[
+        TODO: Fill in help.
+    ]]></help>
+</tool>
+
diff -r 000000000000 -r 46274846fc0c PY2_PATCH/script.py
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/PY2_PATCH/script.py	Mon Mar 07 14:46:55 2022 +0000
@@ -0,0 +1,15 @@
+import sys
+print 'script starts!'
+
+input1 = sys.argv[1]
+output1 = sys.argv[2]
+
+I = open(input1, 'r')
+O = open(output1, 'w')
+
+for f in I.readlines():
+    O.write(f+'1'+'\n')
+
+O.close()
+I.close()
+
diff -r 000000000000 -r 46274846fc0c PY2_PATCH/test-data/input.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/PY2_PATCH/test-data/input.txt	Mon Mar 07 14:46:55 2022 +0000
@@ -0,0 +1,5 @@
+A
+B
+C
+D
+E