# HG changeset patch
# User jackcurragh
# Date 1658752807 0
# Node ID b90ecf790d5b156a8b457772b03bfb9360738ad3
# Parent  f3265ca6d87c51e443870fa1061b4a5ebc58f610
Uploaded

diff -r f3265ca6d87c -r b90ecf790d5b UMI_riboseq_tool/UMI_riboseq.xml
--- a/UMI_riboseq_tool/UMI_riboseq.xml	Mon Jul 25 12:02:35 2022 +0000
+++ b/UMI_riboseq_tool/UMI_riboseq.xml	Mon Jul 25 12:40:07 2022 +0000
@@ -3,13 +3,13 @@
     <requirement type="package" version="1.75">biopython</requirement>
 </requirements>
 <command detect_errors="exit_code">
-<![CDATA[ python3 '$__tool_directory__/UMI.py' $reads $output $gzip $five_prime_UMI_length $three_prime_UMI_length]]>
+<![CDATA[ python3 $__tool_directory__/UMI.py $reads $output $gzip $five_prime_UMI_length $three_prime_UMI_length]]>
 </command>
 <inputs>
     <param format="fastqsanger,fastqsanger.gz" name="reads" type="data" label="fastqsanger,fastqsanger.gz"/>
     <param name="gzip" type="boolean" truevalue="true" falsevalue="false" checked="True" label="Gzip the outputted FASTQ" />
-    <param name="five_prime_UMI_length" type="integer" value=2 label="Number of UMI bases at the 5' end" help="2 for McGlincy Ingolia Protocol" />
-    <param name="three_prime_UMI_length" type="integer" value=5 label="Number of UMI bases at the 3' end)" help="5 for McGlincy Ingolia Protocol" />
+    <param name="five_prime_UMI_length" type="integer" value='2' label="Number of UMI bases at the 5' end" help="2 for McGlincy Ingolia Protocol" />
+    <param name="three_prime_UMI_length" type="integer" value='5' label="Number of UMI bases at the 3' end)" help="5 for McGlincy Ingolia Protocol" />
 
 </inputs>
 <outputs>