Mercurial > repos > triasteran > trips_create_new_organism

comparison trips_create_new_organism/create_annotation_sqlite.xml @ 8:1a1620b2a7bd draft default tip

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author triasteran
date Tue, 29 Mar 2022 15:10:35 +0000
parents 2227d8ce6f5b
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7:2227d8ce6f5b 8:1a1620b2a7bd
1 <tool id="create_annotation_sqlite" name="create annotation in sqlite for trips-viz" version="0.1.5conda"> 1 <tool id="create_annotation_sqlite" name="create annotation in sqlite for trips-viz" version="0.1.6conda">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="3.1.0">python-intervaltree</requirement> 3 <requirement type="package" version="3.1.0">intervaltree</requirement>
4 <requirement type="package" version="0.4.6">pysqlite3</requirement> 4 <requirement type="package" version="0.4.6">pysqlite3</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 python3 '$__tool_directory__/create_annotation_sqlite.py' $annotation $fasta $pseudo_utr_len $transcript $gene $output 7 python3 '$__tool_directory__/create_annotation_sqlite.py' $annotation $fasta $pseudo_utr_len $transcript $gene $output
8 ]]></command> 8 ]]></command>