# HG changeset patch
# User triasteran
# Date 1648557731 0
# Node ID 2227d8ce6f5be6a056074eb3f99a53a8ac5fc943
# Parent  dd580d6ff10d4502f356210d03d1f9ffc6996e25
Uploaded

diff -r dd580d6ff10d -r 2227d8ce6f5b trips_create_new_organism/create_annotation_sqlite.xml
--- a/trips_create_new_organism/create_annotation_sqlite.xml	Tue Mar 01 12:42:24 2022 +0000
+++ b/trips_create_new_organism/create_annotation_sqlite.xml	Tue Mar 29 12:42:11 2022 +0000
@@ -1,9 +1,10 @@
-<tool id="create_annotation_sqlite" name="create annotation in sqlite for trips-viz" version="0.1.4">
+<tool id="create_annotation_sqlite" name="create annotation in sqlite for trips-viz" version="0.1.5conda">
     <requirements>
-		  <container type="docker">triasteran/trips_create_annotation:latest</container>
+        <requirement type="package" version="3.1.0">python-intervaltree</requirement>
+        <requirement type="package" version="0.4.6">pysqlite3</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-	    create_annotation_sqlite $annotation $fasta $pseudo_utr_len $transcript $gene $output
+	  python3 '$__tool_directory__/create_annotation_sqlite.py' $annotation $fasta $pseudo_utr_len $transcript $gene $output
     ]]></command>
     <inputs>
      <param format="gtf,gff" name="annotation" type="data" label="GTF/GFF3 File"/>