Mercurial > repos > trinity_ctat > ctat_lncrna

diff test-data/slncky/reads.simPE.browse.html @ 0:a940c4a36a43 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Upload ctat tools.
author trinity_ctat
date Tue, 17 Jul 2018 11:49:16 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/slncky/reads.simPE.browse.html	Tue Jul 17 11:49:16 2018 -0400
@@ -0,0 +1,83 @@
+<html>
+<head>
+<script type="text/javascript" charset="utf8" src="search.js"></script>
+
+<!-- DataTables CSS -->
+<link rel="stylesheet" type="text/css" href="https://cdn.datatables.net/1.10.9/css/jquery.dataTables.css">
+<!-- Bootstrap CSS -->
+<link rel="stylesheet" type="text/css" href="https://bootswatch.com/paper/bootstrap.min.css">
+<!-- jQuery -->
+<script type="text/javascript" charset="utf8" src="https://code.jquery.com/jquery-1.11.3.min.js"></script>
+
+<!-- DataTables -->
+<script type="text/javascript" charset="utf8" src="https://cdn.datatables.net/1.10.9/js/jquery.dataTables.min.js"></script>
+<style> select { font-size: 90%; width: 30px; } th { font-size: 80%; } td { font-size: 80%; } td.red {color: red;} td.green {color: #009900;} </style>
+<script type="text/javascript" class="init">
+$(document).ready(function() {
+	$('#table_id').DataTable();
+} );
+</script>
+
+
+</head>
+<body>
+
+<nav class="navbar navbar-default">
+<div class="container-fluid" style="position: absolute; width: 100%;">
+<div class="navbar-header">
+<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#bs-example-navbar-collapse-2">
+<span class="sr-only">Toggle navigation</span>
+<span class="icon-bar"></span>
+<span class="icon-bar"></span>
+<span class="icon-bar"></span>
+</button>
+<a class ="navbar-brand" href="#"><p style="font-size:26"><em>slncky</em> Evolution Browser</p></a>
+</div>
+
+<div class="collapse navbar-collapse" id="bs-example-navbar-collapse-2">
+<ul class="nav navbar-nav">
+
+<a href="#"><li class="active">Browse</a></li>
+</ul>
+<ul class="nav navbar-nav navbar-right">
+</ul>
+</div>
+</div>
+</nav>
+
+<div class="container">
+<div class="jumbotron">
+<h2>Browse lncRNAs</h2>  
+<hr>
+<br>
+<table id="table_id" class="table table-striped table-hover" cellspacing="0" width="100%">
+<thead>
+<tr>
+<th>Lnc</th>
+<th>Name</th>
+<th>Ortholog</th>
+<th>Ortholog Name</th>
+<th>Type</th>
+<th>Transcript-Transcript Identity</th>
+<th>Trascript-Genome Identity</th>
+<th>Indel Rate</th>
+<th>Conserved Splice Sites</th>
+<th>Total Splice Sites</th>
+<th>Lnc Exons Aligned</th>
+<th>Ortholog Exons Aligned</th>
+</tr>
+</thead>
+<tbody>
+<tr><td><a href="lnc/STRG.25.1.html" target="_blank">STRG.25.1</a></td><td>MALAT1</td><td>uc008gfj.2</td><td>Malat1</td><td>intergenic</td><td>0.63</td><td>0.63</td><td>-</td><td>0.0</td><td>0</td><td>1,</td><td>1,</td></tr>
+<tr><td><a href="lnc/STRG.5.1.html" target="_blank">STRG.5.1</a></td><td>Unannotated</td><td>uc009vfa.1</td><td>Atpase6</td><td>intergenic</td><td>0.00</td><td>0.00</td><td>-</td><td>0.0</td><td>0</td><td>NA</td><td>NA</td></tr>
+<tr><td><a href="lnc/STRG.52.1.html" target="_blank">STRG.52.1</a></td><td>JA760615</td><td>uc012hdm.1</td><td>BC071253</td><td>intergenic</td><td>0.00</td><td>-0.00</td><td>-</td><td>0.0</td><td>0</td><td>NA</td><td>NA</td></tr>
+<tr><td><a href="lnc/STRG.48.2.html" target="_blank">STRG.48.2</a></td><td>OK/SW-cl.16</td><td>uc009vez.1</td><td>Cox2</td><td>intergenic</td><td>0.00</td><td>-0.00</td><td>-</td><td>0.0</td><td>0</td><td>NA</td><td>NA</td></tr>
+<tr><td><a href="lnc/STRG.44.1.html" target="_blank">STRG.44.1</a></td><td>TVAS5</td><td>uc009vew.1</td><td>AK018753</td><td>intergenic</td><td>0.00</td><td>-0.00</td><td>-</td><td>0.0</td><td>0</td><td>NA</td><td>NA</td></tr>
+<tr><td><a href="lnc/STRG.49.1.html" target="_blank">STRG.49.1</a></td><td>OK/SW-cl.16</td><td>uc009vfa.1</td><td>Atpase6</td><td>intergenic</td><td>0.00</td><td>-0.00</td><td>-</td><td>0.0</td><td>0</td><td>NA</td><td>NA</td></tr>
+<tr><td><a href="lnc/STRG.45.1.html" target="_blank">STRG.45.1</a></td><td>TVAS5</td><td>uc009vew.1</td><td>AK018753</td><td>intergenic</td><td>0.00</td><td>-0.00</td><td>-</td><td>0.0</td><td>0</td><td>NA</td><td>NA</td></tr>
+<tr><td><a href="lnc/STRG.51.1.html" target="_blank">STRG.51.1</a></td><td>MTND5</td><td>uc009vfc.1</td><td>Cytb</td><td>intergenic</td><td>0.00</td><td>-0.00</td><td>-</td><td>0.0</td><td>0</td><td>NA</td><td>NA</td></tr>
+</tbody>
+</table>
+</div>
+</body>
+</html>