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1 #parse reactivity file into a dictionary
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2
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3 import sys
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4
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5 def parse_dist(in_file):
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6 result = []
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7 distribution = {}
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8 name = []
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9 f = open(in_file)
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10 for aline in f.readlines():
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11 line = aline.strip()
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12 dis = line.strip()
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13 dist = dis.split('\t') #split the line and the reactivites or reads are in a list
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14 if len(dist) > 0:
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15 if len(dist) == 1:
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16 if dist[0].strip().find('coverage')==-1:
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17 name.append(line) #add the name in the name list
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18 flag = 1
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19 t_name = line
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20 else:
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21 distri = []
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22 for i in range(0, len(dist)):
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23 distri.append(dist[i].strip())
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24 distribution[t_name] = distri #add the list of reactivities into a dictionary
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25 result.append(name)
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26 result.append(distribution) #Output the dictionary
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27 f.close()
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28 return result
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