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comparison predict/predict_RNAs.xml @ 46:698d5897b999 draft

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author tyty
date Mon, 20 Oct 2014 16:06:16 -0400
parents 128fcc5aedde
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45:28664b289a69 46:698d5897b999
1 <tool id="predict_pipeline" name="RNA structure prediction" version="1.0"> 1 <tool id="predict_pipeline" name="RNA structure prediction" version="1.0">
2 <description></description> 2 <description></description>
3 <command interpreter="python">predict_RNAs.py $rna_list $reference_file $reactivity_file $output </command> 3 <command interpreter="python">predict_RNAs.py $rna_list $reference_file $reactivity_file $output </command>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="1.61">biopython</requirement> 5 <requirement type="package" version="1.61">biopython</requirement>
6 <requirement type="package" version="1.7">numpy</requirement> 6 <requirement type="package" version="1.7.1">numpy</requirement>
7 <requirement type="package" version="1.2.1">matplotlib</requirement> 7 <requirement type="package" version="1.2.1">matplotlib</requirement>
8 </requirements> 8 </requirements>
9 <inputs> 9 <inputs>
10 <param name="rna_list" type="data" format="txt" label="List of RNA ids to predict"/> 10 <param name="rna_list" type="data" format="txt" label="List of RNA ids to predict"/>
11 <param name="reference_file" type="data" format="fasta" label="Reference genome/transcriptome"/> 11 <param name="reference_file" type="data" format="fasta" label="Reference genome/transcriptome"/>